Protein ZmC3H39
ZmC3H39 is a protein in the C3H family.
Information
TF Name: ZmC3H39
Species: Maize
TF Family: C3H
Gene Name(Synonym): C3H39
Uniprot ID: C0PFP1

Protein ZmC3H39

ZmC3H39 is a protein in the C3H family.

Overview of domains present in v5 transcripts
PF00642
Zm00001eb284250_T002
Zm00001eb284250_T001

Protein-DNA Interactions

Meme Logos for Maize v4 Gene IDs


Gene IDTypeMEME LogoSequenceFIMOPosition
Zm00001d037769DAPseq no logo sequence fimo position
Zm00001d037769DAPseq no logo sequence fimo position
Zm00001d037769ChIPseq no logo sequence fimo position
Zm00001d037769PChIPseq no logo sequence fimo position

Interactions where ZmC3H39 is the regulator


There are no protein-dna interactions that fit this criteria.

Interactions where ZmC3H39 is the target  
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There are 173 protein-dna interactions that fit this criteria. download excel sheet

Zm00001eb284250_T002 from maize genome v5

Amino Acid Sequence
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MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

Secondary Structure Color Code
BEND region with high backbone curvature without specific hydrogen bonding
HELX_LH_PP_P left-handed polyproline helix
HELX_RH_3T_P right-handed 3-10 helix
HELX_RH_AL_P right-handed alpha helix
HELX_RH_PI_P right-handed pi helix
STRN beta strand
TURN_TY1_P type I turn
UNDETERMINED no data available
Domains Present
PF00642
PF00642
PF00642
PF00642
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Nucleotide Sequence
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CCACGCCTCCACGGCCAAGCGCCTC...

GRMZM5G801627_T01 from maize genome v3


Related TFome: pUT3064

Amino Acid Sequence
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MMMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFK
VRRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGC
RRRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPP
MSPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTT
ASGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

Nucleotide Sequence
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CCACGCCTCCACGGCCAAGCGCCTC...

GRMZM5G801627_T02 from maize genome v3

Amino Acid Sequence
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MMMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFK
VRRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGC
RRRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPP
MSPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTT
ASGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

Nucleotide Sequence
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CCACGCCTCCACGGCCAAGCGCCTC...

Zm00001d037769_T001 from maize genome v4

Amino Acid Sequence
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MMMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFK
VRRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGC
RRRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPP
MSPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTT
ASGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

Nucleotide Sequence
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CGCCTCCACGGCCAAGCGCCTCGAA...

Zm00001eb284250_T001 from maize genome v5

Amino Acid Sequence
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MMMMGERAHAPPWQRSPAASGVTDADDASPYALLAALQHYLPSNEVAAYDEDDEEAALAAATAAVDAYACDEFRMYEFKV
RRCSRGRNHDWTACPYAHPGEKARRRDPRRYHYSGAACPDFRKGGCKRGDACEFAHGVFECWLHPSRYRTQPCKDGTGCR
RRVCFFAHTPDQLRVPPPRQSSPRGAAAAASPLAESYDGSPLRRQAFESYLTKSGIVSSPPPTSTLVSPPRSPPSESPPM
SPDAAAALRRGSWPGVGSPVNEVLASMRQLRLGGGSPRSAPSGGSFLGGGYPFGSPKSPAGLYSLPSTPTRPSPVTVTTA
SGATVLTVERLNLGLIGDEEPVMERVESGRALREKVFERLSKEAAVPSDTAASANVEGAAPAPDVGWVSDLIN

Nucleotide Sequence
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CCACGCCTCCACGGCCAAGCGCCTC...


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